Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015886922.1_cds_XP_016441094.1_36488
CDS Infomation

[gene=LOC107766763] [db_xref=GeneID:107766763] [protein=ERAD-associated E3 ubiquitin-protein ligase HRD1B-like] [protein_id=XP_016441094.1] [location=complement(join(82043..82180,82831..83071,84638..84800,85169..85362,85447..85596,86851..87027,87965..88497))] [gbkey=CDS]
Sequence

ATGGTGAGGTTACAAACTTATGCGGGGCTTAGCATAATAGCTACACTGGCCGTTATTTAT
CATGCGTTTAATAGCAGAGGCCAATTTTACCCAGCAATGGTTTATTTATCAACGTCCAAG
ATCAGTCTGGTTCTTCTTCTTAACATGGGTCTTGCCCTCATGTGCATTTTGTGGCAGCTG
ACTAAGAAAATCTTCCTTGGTTCTCTTCGAGAGGCTGAGGTGGAGAGGCTGAACGAGCAG
TCTTGGAGGGAACTCATGGAAATACTTTTTGCCATCACAATTTTCCGGCAAGACTTCTCA
GTTATGTTTCTTGCAATGGTAACTGCACTCTTGCTTATCAAGGGCTTGCACTGGTTGGCT
CAAAAGAGGGTTGAGTATATTGAAACAACCCCAACTGTTACTACGTTGTCCCATGTTCGC
ATAGTCTCCTTCTTGGGCTTTCTCCTCCTCATAGACAGTCTCTTCTTGTACGACTCTGTC
AGCTATTTGATTCAGACAAGACAGGCATCTGTTTCTCTATTCTTTGCATTCGAGTACATG
ATACTTGTGACAACAACTGTCTCAACTTTTGTAAAATATGTCTTCTACATAAGCGACATG
CTTATGGAAGGACAATGGGAGAGGAAGCCTGTCTATACTTTCTACTTAGAACTTATCCGA
GACTTGCTCCACTTGTCTCTGTACTTGTGCTTCTTCATGGTGATTTTCATGAACTATGGC
GTGCCCCTGCATTTGATTCGGGAGCTTTATGAGACATTCCGCAACTTCAAGATTCGAGTT
GCCGATTACATACGCTATCGGAGGATCACTTCAAATATGAATGACCGTTTTCCAGATGCT
ACACCAGAAGAGCTCGATGTAAGTGATGCTACCTGCATCATATGTCGTGAGGAGATGACC
ACTGCTAAGAAACTTATTTGTGGGCATCTGTTTCATGTACATTGCCTCCGTTCATGGCTA
GAGCGTCAACACACCTGTCCTACTTGCAGAGCCCTTGTTGTGCCAGCTGAAAATGGGACG
AATGTGGTAGGATCACGACCAGATGCTCAACAAGGCCCTGGATCAAGTGGTGCAAGTACA
TCTCAGAGTGCGCAGGCAAATACCGTGGCAAATAATAATGTTAGCCAACACCAGGCTAGA
CTCCAAGCTGCAGCAGCAGCAGCAGCAGCAGTTTATCAGAAGTCCTTTGTTTACCCTTCT
GTACCAACGCTAGCGTGGTCTCCTGGATATGCTCCAGTTCCTCCGTACTATTGTCCAACA
GGCAGTTCTGTCAATGTGCACCCAGATGGGGAGCGGGCATCGAATGAACAGTCACCGCAA
CATCAGTTAGCAAATATGCCCTTTGCTCAATATCCACAATGTGGTTTCCTCCCTTTTCAG
TATCCTGGTGCTAACAACCTTAGTATTCCAAATGCTCAACTTGAGGCCCATAAGATACTT
TTACAGCAACAAATTGAGGTTCTGCAAAACCAGCTCAAGCTTTTAGAGAATCCAAACACA
CAGAAACCAGCAGATGCTTTAGGAATTTCTGATAGTAAGGGAAAAACAATTTCGTCAGAG
AACTCCCAAGGACAAAGCGAAGGTGCAGAAATGTGA

Peptide Sequence

PEP ID

XP_016441094.1
PEP Infomation

PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Nicotiana tabacum]
Sequence

MVRLQTYAGLSIIATLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLALMCILWQL
TKKIFLGSLREAEVERLNEQSWRELMEILFAITIFRQDFSVMFLAMVTALLLIKGLHWLA
QKRVEYIETTPTVTTLSHVRIVSFLGFLLLIDSLFLYDSVSYLIQTRQASVSLFFAFEYM
ILVTTTVSTFVKYVFYISDMLMEGQWERKPVYTFYLELIRDLLHLSLYLCFFMVIFMNYG
VPLHLIRELYETFRNFKIRVADYIRYRRITSNMNDRFPDATPEELDVSDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPAENGTNVVGSRPDAQQGPGSSGAST
SQSAQANTVANNNVSQHQARLQAAAAAAAAVYQKSFVYPSVPTLAWSPGYAPVPPYYCPT
GSSVNVHPDGERASNEQSPQHQLANMPFAQYPQCGFLPFQYPGANNLSIPNAQLEAHKIL
LQQQIEVLQNQLKLLENPNTQKPADALGISDSKGKTISSENSQGQSEGAEM

Transcript Sequence

Gene sequence data has not been registered.